dotfiles/zsh_local_e5

#set username for zshrc
DEFAULT_USER="kheinicke"

[[ ":$PATH:" != *":${HOME}/.local/bin:"* ]] && PATH="${HOME}/.local/bin:${PATH}"
export EDITOR=nvim
export KRB5CCNAME=$HOME/.krb5cc

alias set_conda="source /usr/scripts/set_conda.sh && source ~/.set_conda_local"
alias rf="set_conda && conda activate root_forge"
alias ipy="set_conda && conda activate root_forge_36 && ipython"

export CONDOR_LOGS=/ceph/users/kheinicke/condor_logs
export D=/ceph/users/kheinicke/b2oc/dsk-run2

function batchmake () {
    mkdir -p $CONDOR_LOGS/{stderr,log,stdout}
    snakemake --cores 10000 --local-cores 64 --latency-wait 1 \
        --max-jobs-per-second 32 --max-status-checks-per-second 512 \
        --drmaa \
" getenv = True "$'\n'\
" request_cpus = {threads}"$'\n'\
" output = $CONDOR_LOGS/stdout/{rule}.{wildcards}.out"$'\n'\
" error = $CONDOR_LOGS/stderr/{rule}.{wildcards}.err"$'\n'\
" logs = $CONDOR_LOGS/log/{rule}.{wildcards}.log "$'\n'\
" request_memory = 8G "$'\n'\
" +MaxRunHours = ${MAXRUNHOURS:-24} " \
${*} | sed -u "s/DEBUG: Sleeping for a moment/./"
}